Read abundance X28783
The abundance (number of occurrences) of a read in a read set is an indicator value for read confidence in high-throughput sequencing studies.
Write pseudocode, Python code, and C++ code for the read abundance problem. Make two submissions, including the pseudocode as a comment to both the Python and the C++ code.
Input
The input is a collection of n strings S={s1,s2,…,sn} (genomic sequence reads, possibly reverse complemented) over the alphabet {A,C,G,T}.
Output
The output is the sorted frequency distribution of S.
Public test cases
Input
TCATC TTGAT TCATC TGAAA GATGA TTTCA ATCAA TTGAT TTTCA
Output
ATCAA 3 GATGA 3 TGAAA 3
Information
- Author
- Gabriel Valiente
- Language
- English
- Official solutions
- C++ Python
- User solutions
- C++ Python